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- 3- Methylcrotonyl-coa Carboxylase Deficiency: Biochemical and Molecular Studies in 36 PatientsPublication . Fonseca, Helena; Sousa, Carmen; Marcão, Ana; Rocha, Hugo; Lopes, Lurdes; Vilarinho, Laura3-methylcrotonylglycinuria (MCG) is a disease included in the expanded newborn screening that until recently was considered a rare inherited disorder of the metabolism. In the catabolism of leucine, MCG is blocked in the fourth step due to deficiency of the enzyme 3-methylcrotonyl-CoA carboxylase (3-MCC) (Dantas et al). The biochemical diagnosis of disability in 3-MCC is characterized by marked increase of acid 3-hydroxyisovaleric (3-HIVA) and 3-methylcrotonylglycine (3-MCG) in urine and high concentrations of 3-hydroxyisovalerylcarnitine (C5-OH) in the blood. The molecular characterization is the study of genes MCCA and MCCB that encodes the enzyme 3-MCC. The authors report biochemical and mutation data of 36 MCC deficient individuals, one diagnosed due to clinical symptoms, 25 identified by newborn screening and 10 mothers identified following the positive newborn screening of their sons. All patients had an increased value of C5-OH, primary biochemical marker screening for this condition. In this cohort of 36 patients the genetic study intended to identify the pathogenic mutations using an analysis of 19 exons in the MCCA gene and 17 exons in the MCCB gene. A total of 32 mutations were detected of which 24 (75%) have, neither been described in the literature nor in the Human Gene Mutation Database. The results described show that the genotype cannot predict the phenotype or metabolic risk of these cases, but it is capable to confirm the diagnosis in doubtful cases. The clinical phenotype is very heterogeneous, most patients showing different mutations making the phenotype-genotype correlation difficult. The 3-MCC deficiency is a pathology not completely understood described as a genetic condition with low clinic penetrance. However, it can lead to a severe clinic phenotype resembling classic organic acidurias, has it was recently demonstrated by Grunert et al. Dantas, M. F., T. Suormala, et al. (2005). 3-Methylcrotonyl-CoA carboxylase deficiency: mutation analysis in 28 probands, 9 symptomatic and 19 detected by newborn screening.
- 3-Methylcrotonyl CoA Carboxylase Deficiency: Disorder or Just a Biochemical Phenotype?Publication . Fonseca, Helena; Bueno, Maria; Sousa, Carmen; Marcão, Ana; Lopes, Lurdes; Rocha, Hugo; Vilarinho, LauraIntroduction: 3-methylcrotonyl-CoA carboxylase deficiency (MCCD) was considered extremely rare before newborn screening (NBS) was undertaken but is now found in a number of asymptomatic babies or sometimes their mothers. This disorder of leucine metabolism, is the commonest organic aciduria found by screening, with a incidence of about 1:32 392 in our country. The clinical phenotype has been shown to vary considerably, ranging from entirely asymptomatic to death in infancy. A review of the literature on 37 individuals indicates that only 27% developed normally and stayed completely asymptomatic. Approximately 30% were reported to suffer from muscular hypotonia and psychomotor retardation, and almost half suffer from various other neurological symptoms. Even a lethality of 11% was observed. The metabolic phenotype characterizing MCCD is the elevated excretion of the diagnostic compounds 3-methylcrotonylglycine and 3-hydroxyisovaleric acid, and the presence of abnormally elevated blood levels of 3-hydroxyisovalerylcarnitine (C5-OH), as determined by tandem mass spectrometry (MS/MS). Patient and methods: The authors present a symptomatic case with an increase of C5-OH in the acylcarnitine profile who have a developmental delay. Blood spot samples from newborns are collected between day 3 and 6 in Watman 903 filter paper. Acylcarnitines in samples are analysed by MS/MS. Genes MCCA and MCCB that encodes the enzyme 3-MCC were studied by reported methods. Results: The molecular study has allowed the identification of the compound heterozygous in this patient: the frameshift mutation p.S173FfsX25 and the missense mutation p.V339M. Both mutations are described in the literature. Discussion: The newborn screening identification of a patient which developed symptoms seems to indicate that this disease should be included in NBS programs. More studies are needed to find genetic and/or biochemical markers that explain why a relatively small number of individuals are at risk of developing a severe disease phenotype. Another important reason to include MCCD in our panel is that other disorders are also detected by the marker C5OH; for example deficiencies of holocarboxylase synthetase, and 3-hydroxy- 3-methylglutaryl-CoA lyase.
- 3-Methylcrotonylglycinuria: a new common mutation in the Portuguese population?Publication . Fonseca, Helena; Sousa, Carmen; Marcão, Ana; Rocha, Hugo; Lopes, Lurdes; Vilarinho, LauraIntroduction: 3-Methylcrotonylglycinuria (MCG) is an inborn error of the leucine catabolism resulting from isolated biotin-insensitive deficiency of 3-methylcrotonyl-CoA carboxylase (3-MCC), the enzyme converting 3-methylcrotonoyl-CoA to 3-methylglutaconyl-CoA. The metabolic phenotype characterizing MCC deficiency is the elevated excretion of the diagnostic compounds 3-methylcrotonylglycine and 3-hydroxyisovaleric acid, and the presence of abnormally elevated blood levels of 3-hydroxyisovalerylcarnitine (C5-OH), as determined by tandem mass spectrometry (MS/MS). Expanded newborn screening for inborn errors of metabolism using MS/MS has demonstrated that 3-MCC deficiency is one of the most commonly detected inherited organic acidurias. Patient and methods: The authors report the results of molecular studies performed in six cases in a universe of thirty patients with an increase of C5-OH in the acylcarnitine profile. Blood spot samples from newborns are collected between day 3 and 6 in Watman 903 filter paper. Acylcarnitines in samples are analysed in tandem mass spectrometer. The molecular characterization is the study of genes MCCA and MCCB that encodes the enzyme 3-MCC. Results: The six cases showed the same novel mutation p.N230D in the MCCB gene, proving that this is the most common new mutation in our population. According to the studies conducted to this new mutation using bioinformatic applications, it is considered a benign mutation, but the alignment of species and the population study conducted, showed that this mutation is responsible for the biochemical phenotype found in these cases. Discussion: Of the thirty MCC cases studied, p.N230D mutation revealed to be the most frequent new mutation. Bioinformatic analysis showed that this mutation is located in a non conserved area but the mutant residue was never present in the homologous proteins analyzed.
- Adult-onset form in VLCAD deficiency: seven casesPublication . Sousa, Carmen; Marcão, Ana; Nogueira, Célia; Fonseca, Helena; Rocha, Hugo; Silva, Carla; Guimas, Arlindo; Evangelista, Teresinha; Maré, Rui; Vilarinho, LauraVery long chain acyl-Co-A dehydrogenase deficiency (VLCADD, MIM 201475) is an autosomal recessive disorder characterized by impaired mitochondrial β-oxidation of fatty acids with a chain length between 14 and 18 carbons. The prevalence of VLCAD deficiency in Portugal is 1/101,613. VLCADD has three forms of clinical presentation: severe early-onset; intermediate with childhood onset and adult-onset, of mild severity, characterized by exercise intolerance, myalgia and recurrent episodes of rhabdomyolysis. The development of electrospray ionization tandem mass spectrometry (MS/MS) has allowed beyond the screening of neonatal forms a marked improvement on diagnosis of the adult onset form. The authors report the acyl-carnitines profile that revealed accumulation of tetradecenoyl carnitine (C14:1) in seven individuals with clinical symptoms with the ages between 11 and 63. The eldest patient was diagnosed at the age of 63 years. These results were confirmed by molecular ACADVL gene analysis. When rhabdomyolysis is present in a patient, and after differential diagnosis, it is important to consider the possibility of a VLCAD deficiency. This late-onset form may be undetectable by acyl-carnitine profile in asymptomatic period, and only in crisis is informative. However, if VLCADD is considered the molecular analysis of ACADVL should be performed in all suspected cases.
- Aplicação dos marcadores IRT/PAP/IRT no rastreio neonatal da fibrose quísticaPublication . Lopes, Lurdes; Marcão, Ana; Carvalho, Ivone; Sousa, Carmen; Fonseca, Helena; Rocha, Hugo; Vilarinho, LauraA Fibrose Quística (FQ) é uma doença genética, com transmissão autossómica recessiva. Bioquimicamente deve-se à deficiência na proteína Cystic Fibrosis Transmembrane Condutance Regulator que é codificada pelo gene CFTR, localizado no cromossoma 7. Estão descritas cerca de 2000 variantes genéticas associadas a esta doença. Iniciou-se no final de 2013 um estudo piloto integrado no Programa Nacional de Diagnóstico Precoce (PNDP), que incluiu 80,000 recém-nascidos (RN). O aumento da concentração sanguínea da tripsina imunoreactiva (IRT) nos primeiros dias de vida dos RN com FQ possibilita o rastreio neonatal desta doença. No entanto, apesar de uma boa sensibilidade (95%), o IRT não é um marcador específico (34-75%) para a FQ, e um rastreio baseado unicamente neste marcador tem um número elevado de falsos positivos. Por esta razão, têm sido propostos vários algoritmos de rastreio, incluindo outros marcadores bioquímicos como a Proteína Associada à Pancreatite (PAP). Neste estudo, o algoritmo de rastreio utilizado baseia-se na determinação do IRT / PAP / IRT em sangue colhido em papel de filtro, sendo a amostra de sangue a mesma colhida para as restantes doenças rastreadas. Neste estudo foram identificadas 680 amostras com valor elevado de IRT ao rastreio, mas apenas em 272 casos foram solicitadas novas amostras por apresentarem também aumento de PAP. Esta estratégia reduziu significativamente os pedidos de segunda amostra de sangue. Foram diagnosticados neste estudo 11 doentes, o que implica uma prevalência ao nascimento de aproximadamente 1:7,200, no entanto este estudo será alargado a mais 80,000 RN para estabelecermos a real prevalência desta patologia na nossa população.
- Aplicação dos marcadores IRT/PAP/IRT no rastreio neonatal da fibrose quísticaPublication . Lopes, Lurdes; Marcão, Ana; Carvalho, Ivone; Sousa, Carmen; Fonseca, Helena; Rocha, Hugo; Vilarinho, LauraA Fibrose Quística (FQ) é uma doença genética, com transmissão autossómica recessiva. Bioquimicamente deve-se à deficiência na proteína Cystic Fibrosis Transmembrane Condutance Regulator que é codificada pelo gene CFTR, localizado no cromossoma 7. Estão descritas cerca de 2000 variantes genéticas associadas a esta doença. Iniciou-se no final de 2013 um estudo piloto integrado no Programa Nacional de Diagnóstico Precoce (PNDP), que incluiu 80,000 recém-nascidos (RN). O aumento da concentração sanguínea da tripsina imunoreactiva (IRT) nos primeiros dias de vida dos RN com FQ possibilita o rastreio neonatal desta doença. No entanto, apesar de uma boa sensibilidade (95%), o IRT não é um marcador específico (34-75%) para a FQ, e um rastreio baseado unicamente neste marcador tem um número elevado de falsos positivos. Por esta razão, têm sido propostos vários algoritmos de rastreio, incluindo outros marcadores bioquímicos como a Proteína Associada à Pancreatite (PAP). Neste estudo, o algoritmo de rastreio utilizado baseia-se na determinação do IRT / PAP / IRT em sangue colhido em papel de filtro, sendo a amostra de sangue a mesma colhida para as restantes doenças rastreadas. Neste estudo foram identificadas 680 amostras com valor elevado de IRT ao rastreio, mas apenas em 272 casos foram solicitadas novas amostras por apresentarem também aumento de PAP. Esta estratégia reduziu significativamente os pedidos de segunda amostra de sangue. Foram diagnosticados neste estudo 11 doentes, o que implica uma prevalência ao nascimento de aproximadamente 1:7,200, no entanto este estudo será alargado a mais 80,000 RN para estabelecermos a real prevalência desta patologia na nossa população.
- Bases moleculares de los defectos en el complejo mitocondrial ETF/ETF-QOPublication . Rocha, Hugo; Nogueira, Célia; Martins, Esmeralda; Rodrigues, Esmeralda; Leão, Miguel; Sousa, Carmen; Fonseca, Helena; Marcão, Ana; Gaspar, Ana; Brandão, Otilia; Santos, Helena; Coelho, Teresa; Ribeiro, J. Miguel; Vilarinho, LauraDefectos en el complejo mitocondrial ETF/ETF-QO (ETF - flavoproteína transferidora de electrones; ETFQO - flavoproteína transferidora de electrones ubiquinona oxidorreductasa), resultan en la disfunción secundaria de 11 deshidrogenasas que utilizan este complejo para transferir los electrones a la cadena de transporte electrónico, bloqueando la β-oxidación de los ácidos grasos, de aminoácidos y de la colina. Defectos en el funcionamiento del complejo resultan en una deficiencia multiple de acil-CoA deshidrogenasas (MADD; aciduria glutárica tipo II; OMIM 231680) que representa un grupo muy heterogéneo de enfermedades metabólicas tanto desde el punto de vista clínico como molecular. Pueden tener como causa mutaciones en los genes que codifican para las subunidades del complejo (ETFA, ETFB y ETFDH), genes que codifican los transportadores de riboflavina, del transporte ó de la síntesis del FAD. Bioquímicamente, las MADD se caracterizan por la acumulación de acilcarnitinas de cadena corta, media y larga, siendo su detección la abordaje primaria al diagnóstico, incluso en cribado neonatal. La multiplicidad de defectos genéticos que pueden cursar por una disfunción del complejo ETF/ETF-QO (creyéndose que siguen sin estar identificados todos), el hecho de que no siempre están presentes los marcadores bioquímicos evidentes (acumulación de las acilcarnitinas características) y la grande variabilidad clínica son factores que conducen a una dificultad aumentada en de diagnóstico de este grupo de errores congénitos del metabolismo. En este panorama el conocimiento de la epidemiologia molecular es fundamental. Los autores presentaran las bases moleculares de los trastornos en el funcionamiento del complejo ETF/ETF-QO en Portugal.
- Biochemical and molecular heterogeneity in carnitine palmitoyltransferase ii deficiencyPublication . Sousa, Carmen; Fonseca, Helena; Rocha, Hugo; Marcão, Ana; Vilarinho, Laura; Diogo, Luísa; Sequeira, Sílvia; Costa, Cristina; Leão, Elisa; Conceição, Isabel; Gaspar, AnaIntroduction: Carnitine palmitoytransferase II (CPTII) deficiency is a recessively inherited disorder of lipid metabolism. CPT II deficiency has several clinical presentations: the adult form is characterized by episodes of rhabdomyolysis, usually triggered by extensive exercice, cold, fever or prolonged fasting and the infantile-type CPT II hepatocardiomuscular form presents as severe attacks of hypoketotic, hypoglycemia, occasionally associated with cardiac damage. Molecular analysis of CPT II gene allows not only confirmation of classical forms, with typical biochemical abnormalities, but is also key for the diagnosis of less severe forms.The authors will present biochemical and molecular findings of eight CPT II, patients. Material and methods: Acylcarnitine profiles, on dried blood spots, were done as previously reported (Vilarinho et al) Molecular analysis of CPT II gene was done by direct sequencing as reported elsewhere (Finocchiaro et al.). From the eight patients, three were detected through newborn screening and five with clinical symptoms. Results: More pronounced abnormalities in the acylcarnitine profiles are associated with neonatal forms of the disease, while the patients with late onset forms present smother alterations or completely normal profiles. This biochemical heterogeneity correlates well with genetics data. The molecular analysis revealed the presence of ten different mutations, which seven were never reported. Discussion: Our results support that newborn screening can efficiently detect infantile CPT II deficiency but is less effective in detecting adult forms, were biochemical abnormalities may only be present during acute episodes. In these cases accurate clinical characterization alongside with molecular analysis are the key for diagnosis. Bibliography: J.P. Bonnefont, F. et al (2004) Mol. Aspects Med. 25 495–520. Rashed MS, et al.(1995) Diagnosis of inborn errors of metabolism from blood spots by acylcarnitines and amino acids profiling using automated electrospray tandem mass spectrometry. Pediatr Res.38:324–331 Finocchiaro, G. et al (1991). cDNA cloning, sequence analysis, and chomosomal localization of the gene for human carnitinepalmitoyltransferase. Proc. Natl. Acad. Sci. USA 88, 661–665. K. Gempel1 et al. (2002).Screening for Carnitine Palmitoyltransferase II Deficiency by Tandem Mass Spectrometry Anichini A.et al(2011) Genotype-phenotype correlations in a large series of patients with muscle type CPT II deficiency Vilarinho et al. (2009) Four Years of Expanded Newborn Screening in Portugal with MS/MS
- Clinical, biochemical and molecular findings of 24 Brazilian patients with glutaric acidemia type 1: 4 novel mutations in the GCDH genePublication . Sitta, Angela; Guerreiro, Gilian; de Moura Coelho, Daniella; da Rocha, Vitoria Volfart; dos Reis, Bianca Gomes; Sousa, Carmen; Vilarinho, Laura; Wajner, Moacir; Vargas, Carmen ReglaGlutaric aciduria type 1 (GA-1) is a rare but treatable inherited disease caused by deficiency of glutaryl-CoA dehydrogenase activity due to GCDH gene mutations. In this study, we report 24 symptomatic GA-1 Brazilian patients, and present their clinical, biochemical, and molecular findings. Patients were diagnosed by high levels of glutaric and/or 3-hydroxyglutaric and glutarylcarnitine. Diagnosis was confirmed by genetic analysis. Most patients had the early-onset severe form of the disease and the main features were neurological deterioration, seizures and dystonia, usually following an episode of metabolic decompensation. Despite the early symptomatology, diagnosis took a long time for most patients. We identified 13 variants in the GCDH gene, four of them were novel: c.91 + 5G > A, c.167T > G, c.257C > T, and c.10A > T. The most common mutation was c.1204C > T (p.R402W). Surprisingly, the second most frequent mutation was the new mutation c.91 + 5G > A (IVS1 ds G-A + 5). Our results allowed a complete characterization of the GA-1 Brazilian patients. Besides, they expand the mutational spectrum of GA-1, with the description of four new mutations. This work reinforces the importance of awareness of GA-1 among doctors in order to allow early diagnosis and treatment in countries like Brazil where the disease has not been included in newborn screening programs.
- Detecção e caracterização molecular de defeitos no ciclo da carnitinaPublication . Sousa, Carmen; Mendo, Sónia; Vilarinho, LauraO ciclo da carnitina é uma etapa fundamental da oxidação mitocondrial dos ácidos gordos de cadeia longa, porque catalisa o seu transporte até à matriz mitocondrial para serem oxidados. Este transporte requer quatro proteínas. O transportador de carnitina orgânico (OCTN2), a carnitina palmitoiltransferase 1 (CPT1), a carnitina acilcarnitina translocase (CACT) e a carnitina palmitoiltransferase 2 (CPT2). As alterações nos genes que codificam estas proteínas causam doenças da oxidação mitocondrial dos ácidos gordos, com uma apresentação clínica metabólica, miopática ou cardíaca, que estão associadas à morte súbita infantil. A espectrometria de massa em tandem veio possibilitar o rastreio destas patologias através da avaliação do perfil de acilcarnitinas. Este estudo baseia-se na sua detecção e caracterização molecular. Foram estudados 15 casos e 30 familiares; 11 casos do rastreio neonatal, 2 provenientes de centros estrangeiros e 2 casos com fenótipo clínico. Foram caracterizados molecularmente 13 casos, detectadas 14 mutações causais, cinco das quais não estavam descritas na literatura ou na base de dados HGMD e 8 variantes polimórficas descritas no NCBI. Foram encontradas 5 mutações missense, 4 mutações frameshift (pequenas delecções e inserções), 1 mutação nonsense, 2 delecções e 2 mutações splicing. Este estudo permitiu a confirmação de diagnóstico em nove casos com deficiência no transportador de carnitina, três casos com deficiência em carnitina palmitoiltransferase 2 e um caso com deficiência em carnitina palmitoiltransferase 1. Tornou disponível a caracterização molecular de doentes futuros com diagnóstico clínico, ou bioquímico, deste tipo de patologias.