Browsing by Author "Carvalho, Ana"
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- Bottom up proteomics data analysis strategies to explore protein modifications and genomic variantPublication . Carvalho, Ana; Matthiesen, Rune; Penque, DeborahThe quest to understand biological systems requires further attention of the scientific community to the challenges faced in proteomics. In fact the complexity of the proteome reaches uncountable orders of magnitudes. This means that significant technical and data-analytic innovations will be needed for the full understanding of biology. Current state of art mass spectrometry (MS) is probably our best choice for studying protein complexity and exploring new ways to use MS and MS derived data should be given higher priority. We present here a brief overview of visualization and statistical analyzes strategies for quantitative peptide values on an individual protein basis. These analysis strategies can help pinpoint protein modifications, splice and genomic variants of biological relevance. We demonstrated the application of these data analysis strategies using a bottom-up proteomics data set obtained in a drug profiling experiment. Furthermore, we have also observed that the presented methods are useful for studying peptide distributions from clinical proteomics samples from a large number of individuals. We expect that the presented data analysis strategy will be useful in the future to define functional protein variants in biological model systems and disease studies. Therefore robust software implementing these strategies is urgently needed.
- Environment and Health in Children Day Care CentresPublication . Neuparth, Nuno; Papoila, Ana Luísa; Aelenei, Daniel; Cano, Manuela; Paixão, Paulo; Viegas, João; Martins, Pedro; Araújo Martins, José; Leiria Pinto, Paula; Caires, Iolanda; Pedro, Catarina; Nogueira, Susana; Mendes, Ana; Aguiar, Fátima; Teixeira, João Paulo; Proença, Carmo; Piedade, Cátia; Santos, Madalena; Silvestre, Maria José; Brum, Laura; Nunes, Baltazar; Guiomar, Raquel; Curran, Martin D.; Carvalho, Ana; Marques, Teresa; Virella, Daniel; Alves, Marta; Marques, João; Rosado-Pinto, José; Neuparth, Nuno; Aelenei,Daniel; Caires, Iolanda; Teixeira, João Paulo; Viegas, João; Cano, Manuela; Pinto, Paula LeiriaThis project addresses a set of common clinical problems in the context of children attending day care centres. It is common sense that children get sick more often as soon as they start attending a day care centre on a daily basis and this is particularly true for some groups at risk, as wheezing infants and wheezing pre-school children. Concerning this, some questions remain unclear: 1. The role of indoor air quality - what is the health impact of indoor air environment (including indoor pollutants, house dust mite, temperature and humidity) in wheezing children? 2. The role of virus infections - We don’t know the real role of virus infections in respiratory conditions at day care centre level. There is a lack of information concerning how indoor air environment influence virus infections. 3. The role of building ventilation - what is the impact of building ventilation in the health of wheezing and non-wheezing children? How is ventilation affecting indoor air quality? How is ventilation of day care centres affected by the structure of the buildings? 4. Social impact of this study - what should be the recommendations to improve IAQ? What is new in this project is the collaboration of a health team (medical doctors and other health professionals) with environment specialists, mechanical, civil engineers, epidemiologists and statisticians.