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Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus below the Subgroup Level

2024-08Research article Open access
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dc.contributor.authorGoya, Stephanie
dc.contributor.authorRuis, Christopher
dc.contributor.authorNeher, Richard A.
dc.contributor.authorMeijer, Adam
dc.contributor.authorAziz, Ammar
dc.contributor.authorHinrichs, Angie S.
dc.contributor.authorvon Gottberg, Anne
dc.contributor.authorRoemer, Cornelius
dc.contributor.authorAmoako, Daniel G.
dc.contributor.authorAcuña, Dolores
dc.contributor.authorMcBroome, Jakob
dc.contributor.authorOtieno, James R.
dc.contributor.authorBhiman, Jinal N.
dc.contributor.authorEveratt, Josie
dc.contributor.authorMuñoz-Escalante, Juan C.
dc.contributor.authorRamaekers, Kaat
dc.contributor.authorDuggan, Kate
dc.contributor.authorPresser, Lance D.
dc.contributor.authorUrbanska, Laura
dc.contributor.authorVenter, Marietjie
dc.contributor.authorWolter, Nicole
dc.contributor.authorPeret, Teresa C.T.
dc.contributor.authorSalimi, Vahid
dc.contributor.authorPotdar, Varsha
dc.contributor.authorBorges, Vítor
dc.contributor.authorViegas, Mariana
dc.date.accessioned2025-03-20T11:30:33Z
dc.date.available2025-03-20T11:30:33Z
dc.date.issued2024-08
dc.description.abstractA globally implemented unified phylogenetic classification for human respiratory syncytial virus (HRSV) below the subgroup level remains elusive. We formulated global consensus of HRSV classification on the basis of the challenges and limitations of our previous proposals and the future of genomic surveillance. From a high-quality curated dataset of 1,480 HRSV-A and 1,385 HRSV-B genomes submitted to GenBank and GISAID (https://www.gisaid.org) public sequence databases through March 2023, we categorized HRSV-A/B sequences into lineages based on phylogenetic clades and amino acid markers. We defined 24 lineages within HRSV-A and 16 within HRSV-B and provided guidelines for defining prospective lineages. Our classification demonstrated robustness in its applicability to both complete and partial genomes. We envision that this unified HRSV classification proposal will strengthen HRSV molecular epidemiology on a global scale.
dc.description.sponsorshipN.W. has received grant funding from the Bill and Melinda Gates Foundation and Sanofi.
dc.identifier.citationEmerg Infect Dis. 2024 Aug;30(8):1631-1641. doi: 10.3201/eid3008.240209
dc.identifier.doi10.3201/eid3008.240209
dc.identifier.issn1080-6040
dc.identifier.pmid39043393
dc.identifier.urihttp://hdl.handle.net/10400.18/10446
dc.language.isoeng
dc.peerreviewedyes
dc.publisherCenters for Disease Control and Prevention
dc.relation.hasversionhttps://wwwnc.cdc.gov/eid/article/30/8/24-0209_article#
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subjectF
dc.subjectG
dc.subjectHRSV
dc.subjectRSV
dc.subjectClassification
dc.subjectEpidemiology
dc.subjectEvolution
dc.subjectGenome
dc.subjectGenotype
dc.subjectGlycoprotein
dc.subjectLineage
dc.subjectOrthopneumovirus
dc.subjectPhylogeny
dc.subjectRespiratory Infections
dc.subjectRespiratory Syncytial Virus
dc.subjectSurveillance
dc.subjectInfecções Respiratórias
dc.titleStandardized Phylogenetic Classification of Human Respiratory Syncytial Virus below the Subgroup Levelpor
dc.typeresearch article
dspace.entity.typePublication
oaire.citation.endPage1641
oaire.citation.startPage1631
oaire.citation.titleEmerging Infectious Diseases
oaire.citation.volume30
oaire.versionhttp://purl.org/coar/version/c_970fb48d4fbd8a85

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