Browsing by Author "Ramos, A."
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- Bracketing versus multipoint calibration in determination of isocyanates in agglomerated cork stoppersPublication . Delgado, I.; André, C.; Ramos, A.; Matos, A.S.; Stockham, K.; Kumaran, S.; Castanheira, I.A calibration method was developed for the quantification of isocyanates in cork stoppers agglomerates. Bracketing and multipoint calibration curve was applied to a in-house optimized UPLC/DAD analytical method. The calibration curves were obtained by regression analysis using experimental points that covers the range of concentrations expected in real samples. A contaminated real sample was injected and MDI concentration was 6.2 % and 6.4% when calibration methods to calculate the content were multipoint or bracketing, respectively. According with our results both methods are complementary and necessary to guarantee the reliably of results obtained by chromatographic procedure.
- Diagnosis of a patient with a kinetic variant of medium and short-chain 3-hydroxyacyl-CoA dehydrogenase deficiency by newborn screeningPublication . Vilarinho, L.; Sales Marques, J.; Rocha, H.; Ramos, A.; Lopes, L.; Narayan, S.B.; Bennett, M.J.Medium and short-chain 3-hydroxyacyl-CoA dehydrogenase deficiency is a rare cause of impaired mitochondrial fatty acid oxidation. We present a case report of a patient with hyperinsulinism and homozygosity for a novel mutation causing a kinetic variant of the enzyme. The diagnosis was initially inferred by abnormal newborn screening acylcarnitine analysis with elevated C4-hydroxyacylcarnitine.
- Familial hypercholesterolemia: Molecular characterization of possible cases from the Azores Islands (Portugal)Publication . Cymbron, T.; Mendes, P.; Ramos, A.; Raposo, M.; Kazachkova, N.; Medeiros, A.M.; Bruges-Armas, J.; Bourbon, M.; Lima, M.Familial hypercholesterolemia (FH) is an autosomal dominant disorder of the cholesterol metabolism, which constitutes a risk factor for coronary arterial disease (CAD). In the Azores Islands (Portugal), where mortality from CAD doubles its rate comparatively to the rest of the country and where a high frequency of dyslipidemia has been reported, the prevalence and distribution of FH remain unknown. The molecular characterization of a group of 33 possible cases of FH of Azorean background was undertaken in this study. A DNA array was initially used to search mutations in the LDLR, APOB and PCSK9 loci in 10 unrelated possible cases of FH. No mutations were detected in the array; after sequencing the full LDLR gene, 18 variants were identified, corresponding to two missense (c.806G > A; c.1171G > A) and sixteen synonymous alterations. Six of the synonymous variants which are consistently described in the literature as associated with altered cholesterol levels were used to build haplotypes. The most frequent haplotype corresponded to TTCGCC (45%), a "risk" haplotype, formed exclusively by alleles that were reported to increase cholesterol levels. Some of the variants detected in the full sequencing of the LDLR gene fell within the ligand-binding domain of this gene, defined by exons 2 to 6. To add information as to the role of such variants, these exons were sequenced in the remaining 23 possible FH cases. Two missense alterations (c.185C > T; c.806G > A) were found in this subset of possible FH cases. The missense alteration c.185C > T, identified in one individual, is novel for the Portuguese population. In silico analysis was not conclusive for this alteration, whose role will have to be further investigated. This study represents the first approach to the establishment of the mutational profile of FH in the Azores Islands.
- Molecular diagnosis of invasive aspergillosis in a child with clinical suspicion of mucormycosisPublication . Sabino, Raquel; Ramos, A.; Simões, H.; Palaré, M.J.; Moreno, R.; Ferrão, A.; Lourenço, F.; Marques, J.G.; Martins, C.; Morais, A.; Verissimo, C.Purpose: Invasive aspergillosis is difficult to manage in immunocompromised patients. We present a clinical case of a 13-year-old boy from Cabo Verde who was transferred to the Hematology Unit of a Central Hospital in Lisbon, Portugal, and diagnosed with aplastic anemia. Weeks after hospital admission, in June 2016, he presented febrile neutropenia with negative blood cultures. In August, the patient showed a necrotic lesion of the left wing of the nose. A CT scan of the sinuses showed densification and thickening of the soft tissues of the nasal pyramid, protruding into the nose. A rapid and accurate diagnosis was required since the patient was going to be subjected to bone marrow transplantation. Methods: A biopsy of the nose tissue was performed in the hospital (August 2016) and sent to the Mycology Reference Laboratory of the Portuguese NIH. Tissue fragments were sliced in small fragments and inoculated in Sabouraud dextrose agar and brain heart infusion. Samples were incubated at 30º and 35ºC. In parallel to culture, DNA was extracted from the tissue using the High Pure PCR Template Preparation Kit (Roche Diagnostics Corp., Indianapolis, IN, USA), according to the manufacturer’s instructions. A panfungal PCR reaction was performed in order to detect any fungal DNA present in the tissue sample. For that purpose, the universal fungal primers ITS1 and ITS2 were used. Positive PCR products are then sequenced by Sanger method. A specific PCR directed to Aspergillus was performed using the AsperGenius® multiplex real-time PCR assay (PathoNostics, Maastricht, The Netherlands), following the manufacturer's instructions. The detection of mutations in the Cyp51A gene for A. fumigatus conferring azole resistance was also performed. Results: A positive panfungal PCR was obtained and PCR products were sent to sequencing. Due to the urgency of the case, a real time PCR directed to Aspergillus was also performed directly from the DNA extracted from the biopsy. A positive signal was obtained for Aspergillus fumigatus and no mutations in Cyp51A gene were detected. Sequencing results revealed 100% homology with A. fumigatus sensu stricto. Results were immediately reported to the physician and posaconazole was administered with regression of the lesion. After 30 days, the cultures of the tissue remained negative. In September 2016, nodular lesions appeared in the patients’ lower limbs and voriconazole therapy was then initiated. A complete regression was observed. Multiresistant Klebsiella pneumoniae and Enterobacter asburiae were further isolated from a perianal ulcer and in October 2016 the patient revealed positive bloodcultures of multiresistant Klebsiella pneumoniae. Facing difficulties in the infection control, a multidisciplinary team decided to perform allogeneic bone marrow transplantation, with complete hematological and infections recovery. Conclusion: An early diagnosis and prompt initiation of appropriate antifungal therapy are imperative and essential for a favorable clinical outcome. In this case, the necrotic lesions of the nose and patient’s risk factors conducted to the clinical suspicion of mucormycosis. The molecular approach performed led to the rapid identification of Aspergillus fumigatus and therefore to the adequate antifungal therapy of the patient.