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Please use this identifier to cite or link to this item: http://hdl.handle.net/10400.18/644

Title: Application of Fourier transform infrared spectroscopy and chemometrics for differentiation of Salmonella enterica serovar Enteritidis phage types
Authors: Preisner, Ornella
Guiomar, Raquel
Machado, Jorge
Menezes, José Cardoso
Lopes, João Almeida
Keywords: Salmonella
FT-IR
Spectroscopy
Chemometric
Salmonella Enteritidis
Phage type
Infecções Gastrointestinais
Issue Date: Jun-2010
Publisher: American Society for Microbiology
Citation: Appl Environ Microbiol. 2010 Jun;76(11):3538-44. Epub 2010 Apr 2
Abstract: Fourier transform infrared (FT-IR) spectroscopy and chemometric techniques were used to discriminate five closely related Salmonella enterica serotype Enteritidis phage types, phage type 1 (PT1), PT1b, PT4b, PT6, and PT6a. Intact cells and outer membrane protein (OMP) extracts from bacterial cell membranes were subjected to FT-IR analysis in transmittance mode. Spectra were collected over a wavenumber range from 4,000 to 600 cm 1. Partial least-squares discriminant analysis (PLS-DA) was used to develop calibration models based on preprocessed FT-IR spectra. The analysis based on OMP extracts provided greater separation between the Salmonella Enteritidis PT1-PT1b, PT4b, and PT6-PT6a groups than the intact cell analysis. When these three phage type groups were considered, the method based on OMP extract FT-IR spectra was 100% accurate. Moreover, complementary local models that considered only the PT1-PT1b and PT6-PT6a groups were developed, and the level of discrimination increased. PT1 and PT1b isolates were differentiated successfully with the local model using the entire OMP extract spectrum (98.3% correct predictions), whereas the accuracy of discrimination between PT6 and PT6a isolates was 86.0%. Isolates belonging to different phage types (PT19, PT20, and PT21) were used with the model to test its robustness. For the first time it was demonstrated that FT-IR analysis of OMP extracts can be used for construction of robust models that allow fast and accurate discrimination of different Salmonella Enteritidis phage types.
Peer Reviewed: yes
URI: http://hdl.handle.net/10400.18/644
ISSN: 0099-2240
Publisher version: http://aem.asm.org/content/76/11/3538.long
Appears in Collections:DDI - Artigos em revistas internacionais

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